The current version of PhyloNet is 3.6.1.  

  • Download
  • Download Unstable Version: 3.6.2 Beta (With biallelic marker operations)
  • Usage
  • Troubleshooting
  • Citation
    • If you use PhyloNet, please cite
      • C. Than, D. Ruths, L. Nakhleh (2008) PhyloNet: A software package for analyzing and reconstructing reticulate evolutionary histories, BMC Bioinformatics 9:322.
      • as well as other the publications relevant to the method being used.
  • If you use PhyloNet, please take a moment to register.
  • Funding:
    • Development of the various functionalities in PhyloNet has been generously supported by DOE (DE-FG02-06ER25734), NIH (R01LM009494), and NSF (CCF-0622037, DBI-1062463, CCF-1302179, CCF-1514177) grants and Sloan and Guggenheim fellowships to Luay Nakhleh.