Biblio

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Book Chapter
R. A. L. Elworth, Ogilvie, H. A., Zhu, J., and Nakhleh, L., “Advances in Computational Methods for Phylogenetic Networks in the Presence of Hybridization”, in Bioinformatics and Phylogenetics: Seminal Contributions of Bernard Moret, vol. 29, Cham: Springer, 2019.PDF icon ElworthZhuOgilvieNakhleh.pdf (743.9 KB)
Z. Cao, Liu, X., Ogilvie, H. A., Yan, Z., and Nakhleh, L., “Practical Aspects of Phylogenetic Network Analysis Using PhyloNet”, 2019.
Conference Paper
P. Du, Ogilvie, H. A., and Nakhleh, L., “Unifying Gene Duplication, Loss, and Coalescence on Phylogenetic Networks”, in The International Symposium on Bioinformatics Research and Applications (ISBRA), 2019.PDF icon DuEtAl-ISBRA19.pdf (417.76 KB)
Journal Article
Z. Zhu, Liu, X., Ogilvie, H. A., and Nakhleh, L., “A Divide-and-Conquer Method for Scalable Phylogenetic Network Inference from Multi-locus Data”, Bioinformatics (ISMB 19 Proceedings), vol. 35, pp. i370-i378, 2019.PDF icon ZhuEtAl-ISMB19.pdf (668.97 KB)
G. A. Bravo, Antonelli, A., Bacon, C. D., Bartoszek, K., Blom, M. P. K., Huynh, S., Jones, G., Knowles, L. L., Lamichhaney, S., Marcussen, T., Morlon, H., Nakhleh, L., Oxelman, B., Pfeil, B., Schliep, A., Wahlberg, N., Werneck, F. P., Wiedenhoeft, J., .Willows-Munro, S., and Edwards, S. V., “Embracing heterogeneity: coalescing the Tree of Life and the future of phylogenomics”, PeerJ, vol. 7, p. e6399, 2019.PDF icon PeerJ2019.pdf (3.72 MB)
Y. Wang, Ogilvie, H. A., and Nakhleh, L., “Practical Speedup of Bayesian Inference of Species Phylogenies by Restricting the Space of Gene Trees”, Molecular Biology and Evolution, vol. 37, pp. 1809-1818, 2020.PDF icon MBE2020.pdf (502.98 KB)