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Biblio
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U. Roshan
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A
L. Nakhleh
,
Moret, B. M. E.
,
Roshan, U.
,
John, S. K.
,
Sun, J.
, and
Warnow, T.
,
“
The Accuracy of Phylogenetic Methods for Large Datasets
”
, in
Proc.\ 7th Pacific Symp. on Biocomputing ({PSB02})
, 2002, vol. 7, pp. 211-222.
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D
L. Nakhleh
,
Roshan, U.
,
John, S. K.
,
Sun, J.
, and
Warnow, T.
,
“
Designing Fast Converging Phylogenetic Methods
”
,
Bioinformatics
, vol. 17, pp. S190–S198, 2001.
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E
L. Nakhleh
,
Roshan, U.
,
Vawter, L.
, and
Warnow, T.
,
“
Estimating the Deviation from a Molecular Clock
”
, in
Proceedings of the Second International Workshop on Algorithms in Bioinformatics (WABI 02)
, Rome, Italy, 2002, vol. 2452, pp. 287-299.
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P
Z. Du
,
Stamatakis, A.
,
Lin, F.
,
Roshan, U.
, and
Nakhleh, L.
,
“
Parallel divide-and-conquer phylogeny reconstruction by maximum likelihood
”
, in
Proceedings of the 2005 International Conference on High Performance Computing and Communications
, 2005, vol. 2, pp. 346-350.
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L. Nakhleh
,
Roshan, U.
,
John, S. K.
,
Sun, J.
, and
Warnow, T.
,
“
The Performance of Phylogenetic Methods on Trees of Bounded Diameter
”
, in
First International Workshop on Algorithms in Bioinformatics (WABI 01)
, 2001, vol. Lecture Notes in Computer Science 2149, pp. 214–226.
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C. Coarfa
,
Dotsenko, Y.
,
Mellor-Crummey, J.
,
Nakhleh, L.
, and
Roshan, U.
,
“
PRec-I-DCM3: A Parallel Framework for Fast and Accurate Large Scale Phylogeny Reconstruction
”
, in
Proceedigns of the First IEEE Workshop on High Performance Computing in Medicine and Biology
, 2005, vol. 2, pp. 346-350.
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Y. Dotsenko
,
Coarfa, C.
,
Nakhleh, L.
,
Mellor-Crummey, J.
, and
Roshan, U.
,
“
PRec-I-DCM3: A Parallel Framework for Fast and Accurate Large Scale Phylogeny Reconstruction
”
,
International Journal on Bioinformatics Research and Applications
, vol. 2, pp. 407-419, 2006.
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