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M
Y. Yu, Dong, J., Liu, K., and Nakhleh, L., Maximum Likelihood Inference of Reticulate Evolutionary Histories, Proceedings of the National Academy of Sciences, vol. 111, no. 46, pp. 16448-16453, 2014.PDF icon PNAS-2014-YuEtAl.pdf (1.55 MB)
R
L. Nakhleh, Miranker, D., Barbancon, F., Piel, W. H., and Donoghue, M. J., Requirements of Phylogenetic Databases, in Proceedings of the Third IEEE Symposium on Bioinformatics and Bioengineering (BIBE 2003), 2003, pp. 141-148.
S
P. Du and Nakhleh, L., Species tree and reconciliation estimation under a duplication-loss-coalescence model, The 9th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB). pp. 376-385, 2018.PDF icon DuNakhleh18.pdf (1.28 MB)
U
P. Du, Ogilvie, H. A., and Nakhleh, L., Unifying Gene Duplication, Loss, and Coalescence on Phylogenetic Networks, in The International Symposium on Bioinformatics Research and Applications (ISBRA), 2019.PDF icon DuEtAl-ISBRA19.pdf (417.76 KB)