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H. Zafar, Wang, Y., Nakhleh, L., Navin, N., and Chen, K., “Monovar: single nucleotide variant detection in single cells”, Nature Methods, vol. 13, no. 6, pp. 505-507, 2016.

ZafarEtAl-NMETH2016.pdf (1.51 MB)

H. Zafar, Tzen, A., Navin, N., Chen, K., and Nakhleh, L., “SiFit: A method for inferring tumor trees from single-cell sequencing data under finite-site models”, Genome Biology, vol. 18, p. 178, 2017.

ZafarEtAl-GB17.pdf (2.12 MB)

H. Zafar, Navin, N., Nakhleh, L., and Chen, K., “Computational approaches for inferring tumor evolution from single-cell genomic data”, Current Opinion in Systems Biology, vol. 7, pp. 16-25, 2017.

ZafarEtAl-Rev2017.pdf (1.34 MB)

H. Zafar, Navin, N., Chen, K., and Nakhleh, L., “SiCloneFit: Bayesian inference of population structure, genotype, and phylogeny of tumor clones from single-cell genome sequencing data”, Genome Research, 2019.