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J. Zhu, Yu, Y., and Nakhleh, L., “In the light of deep coalescence: Revisiting trees within networks”, BMC Bioinformatics, vol. 17, no. Suppl 14, p. 415, 2016.

ZhuYuNakhleh-BMCBioinfo2016.pdf (1.06 MB)

J. Zhu, Wen, D., Yu, Y., Meudt, H., and Nakhleh, L., “Bayesian inference of phylogenetic networks from bi-allelic genetic markers”, PLoS Computational Biology, vol. 14, no. 1, p. e1005932, 2018.

ZhuEtAl-PLoSCB18.pdf (10.6 MB)

J. Zhu and Nakhleh, L., “Inference of species phylogenies from bi-allelic markers using pseudo-likelihood”, Bioinformatics, vol. 34, pp. i376-385, 2018.

ZhuNakhleh-ISMB18.pdf (1.26 MB)