Biblio

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E. Erdem, Lifschitz, V., Nakhleh, L., and Ringe, D., “Reconstructing the Evolutionary History of Indo-European Languages using Answer Set Programming”, in Proceedings of the Fifth International Symposium on Practical Aspects of Declarative Languages (PADL 2003), 2003, vol. 2562, pp. 160-176.
R. A. L. Elworth and Nakhleh, L., “Inferring local genealogies on closely related genomes”, RECOMB Comparative Genomics, vol. LNBI 10562. pp. 213-231, 2017.PDF icon ElworthNakhleh-RECOMBCG17.pdf (2.81 MB)
R. A. L. Elworth, Ogilvie, H. A., Zhu, J., and Nakhleh, L., “Advances in Computational Methods for Phylogenetic Networks in the Presence of Hybridization”, in Bioinformatics and Phylogenetics: Seminal Contributions of Bernard Moret, vol. 29, Cham: Springer, 2019.PDF icon ElworthZhuOgilvieNakhleh.pdf (743.9 KB)
R. A. L. Elworth, Allen, C., Benedict, T., Dulworth, P., and Nakhleh, L., “DGEN: A Test Statistic for Detection of General Introgression Scenarios”, Workshop on Algorithms in Bioinformatics (WABI), vol. LIPIcs 19. pp. 19:1 - 19:13, 2018.PDF icon dgen.pdf (547.19 KB)
R. A. L. Elworth, Allen, C., Benedict, T., Dulworth, P., and Nakhleh, L., “ALPHA: A toolkit for automated local phylogenomic analyses”, Bioinformatics, vol. 34, no. 16, pp. 2848-2850, 2018.PDF icon Alpha.pdf (211.74 KB)
M. Edrisi, Zafar, H., and Nakhleh, L., “A Combinatorial Approach for Single-cell Vairant Detection via Phylogenetic Inference”, in Workshop on Algorithms in Bioinformatics (WABI), 2019.PDF icon EdrisiEtAl-WABI19.pdf (2.03 MB)