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E. Erdem, Lifschitz, V., Nakhleh, L., and Ringe, D., Reconstructing the Evolutionary History of Indo-European Languages using Answer Set Programming, in Proceedings of the Fifth International Symposium on Practical Aspects of Declarative Languages (PADL 2003), 2003, vol. 2562, pp. 160-176.
R. A. L. Elworth, Ogilvie, H. A., Zhu, J., and Nakhleh, L., Advances in Computational Methods for Phylogenetic Networks in the Presence of Hybridization, in Bioinformatics and Phylogenetics: Seminal Contributions of Bernard Moret, vol. 29, Cham: Springer, 2019.PDF icon ElworthZhuOgilvieNakhleh.pdf (743.9 KB)
R. A. L. Elworth, Allen, C., Benedict, T., Dulworth, P., and Nakhleh, L., DGEN: A Test Statistic for Detection of General Introgression Scenarios, Workshop on Algorithms in Bioinformatics (WABI), vol. LIPIcs 19. pp. 19:1 - 19:13, 2018.PDF icon dgen.pdf (547.19 KB)
R. A. L. Elworth, Allen, C., Benedict, T., Dulworth, P., and Nakhleh, L., ALPHA: A toolkit for automated local phylogenomic analyses, Bioinformatics, vol. 34, no. 16, pp. 2848-2850, 2018.PDF icon Alpha.pdf (211.74 KB)
R. A. L. Elworth and Nakhleh, L., Inferring local genealogies on closely related genomes, RECOMB Comparative Genomics, vol. LNBI 10562. pp. 213-231, 2017.PDF icon ElworthNakhleh-RECOMBCG17.pdf (2.81 MB)
M. Edrisi, Zafar, H., and Nakhleh, L., A Combinatorial Approach for Single-cell Vairant Detection via Phylogenetic Inference, in Workshop on Algorithms in Bioinformatics (WABI), 2019.PDF icon EdrisiEtAl-WABI19.pdf (2.03 MB)