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C. Coarfa, Dotsenko, Y., Mellor-Crummey, J., Nakhleh, L., and Roshan, U., “PRec-I-DCM3: A Parallel Framework for Fast and Accurate Large Scale Phylogeny Reconstruction”, in Proceedigns of the First IEEE Workshop on High Performance Computing in Medicine and Biology, 2005, vol. 2, pp. 346-350.

Z. Cao, Zhu, J., and Nakhleh, L., “Empirical performance of tree-based inference of phylogenetic networks”, in Workshop on Algorithms in Bioinformatics (WABI), 2019.

CaoEtAl-WABI19.pdf (1.2 MB)

Z. Cao, Liu, X., Ogilvie, H. A., Yan, Z., and Nakhleh, L., “Practical Aspects of Phylogenetic Network Analysis Using PhyloNet”, 2019.