Biblio

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Z. Du, Stamatakis, A., Lin, F., Roshan, U., and Nakhleh, L., Parallel divide-and-conquer phylogeny reconstruction by maximum likelihood, in Proceedings of the 2005 International Conference on High Performance Computing and Communications, 2005, vol. 2, pp. 346-350.
L. Nakhleh, Roshan, U., John, S. K., Sun, J., and Warnow, T., The Performance of Phylogenetic Methods on Trees of Bounded Diameter, in First International Workshop on Algorithms in Bioinformatics (WABI 01), 2001, vol. Lecture Notes in Computer Science 2149, pp. 214–226.
D. Ruths and Nakhleh, L., Techniques for Assessing Phylogenetic Branch Support: A Performance Study, in Proceedings of the Fourth Asia-Pacific Bioinformatics Conference, 2006, pp. 187-196.
C. Than and Nakhleh, L., Inference of parsimonious species phylogenies from multi-locus data by minimizing deep coalescences, in Estimating Species Trees: Practical and Theoretical Aspects, L. L. Knowles and Kubatko, L. S., Eds. Wiley-VCH, 2010.
D. Ruths and Nakhleh, L., Recombination and phylogeny: effects and detection, International Journal on Bioinformatics Research and Applications, vol. 1, pp. 202-212, 2005.
L. Nakhleh, Roshan, U., John, S. K., Sun, J., and Warnow, T., Designing Fast Converging Phylogenetic Methods, Bioinformatics, vol. 17, pp. S190–S198, 2001.
D. Ruths and Nakhleh, L., RECOMP: A Parsimony-based Method for Detecting Recombination, in Proceedings of the Fourth Asia-Pacific Bioinformatics Conference, 2006, pp. 59-68.
Y. Yu, Warnow, T., and Nakhleh, L., Algorithms for MDC-based multi-locus phylogeny inference, The 15th Annual International Conference on Research in Computational Molecular Biology (RECOMB), vol. LNBI 6577. Lecture Notes in Bioinformatics, pp. 531-545, 2011.PDF icon YuWarnowNakhleh-RECOMB11.pdf (369.65 KB)
L. Nakhleh, Roshan, U., Vawter, L., and Warnow, T., Estimating the Deviation from a Molecular Clock, in Proceedings of the Second International Workshop on Algorithms in Bioinformatics (WABI 02), Rome, Italy, 2002, vol. 2452, pp. 287-299.
T. Shigaki, Rees, I., Nakhleh, L., and Hirschi, K., Identification of Three Distinct Phylogenetic Groups of CAX Cation/Proton Antiporters, Journal of Molecular Evolution, vol. 63, pp. 815-825, 2006.
L. Nakhleh, Moret, B. M. E., Roshan, U., John, S. K., Sun, J., and Warnow, T., The Accuracy of Phylogenetic Methods for Large Datasets, in Proc.\ 7th Pacific Symp. on Biocomputing ({PSB02}), 2002, vol. 7, pp. 211-222.

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