L. Nakhleh, Roshan, U., John, S. K., Sun, J., and Warnow, T.,
“The Performance of Phylogenetic Methods on Trees of Bounded Diameter”, in
First International Workshop on Algorithms in Bioinformatics (WABI 01), 2001, vol. Lecture Notes in Computer Science 2149, pp. 214–226.
B. M. E. Moret, Nakhleh, L., Warnow, T., Linder, C. R., Tholse, A., Padolina, A., Sun, J., and Timme, R.,
“Phylogenetic networks: modeling, reconstructibility, and accuracy”,
IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 1, pp. 13–23, 2004.
L. Nakhleh and Wang, L. S.,
“Phylogenetic networks, trees, and clusters”, in
Proceedings of the 2005 International Workshop on Bioinformatics Research and Applications (IWBRA 05), 2005, vol. 3515, pp. 919-926.
S. Takuno, Kado, T., Sugino, R. P., Nakhleh, L., and Innan, H.,
“Population genomics in bacteria: A case study of Staphylococcus aureus.”,
Molecular Biology and Evolution, vol. 29, no. 2, pp. 797-800, 2012.
TakunoEtAl-MBE11.pdf (933.28 KB) Y. Dotsenko, Coarfa, C., Nakhleh, L., Mellor-Crummey, J., and Roshan, U.,
“PRec-I-DCM3: A Parallel Framework for Fast and Accurate Large Scale Phylogeny Reconstruction”,
International Journal on Bioinformatics Research and Applications, vol. 2, pp. 407-419, 2006.
C. Coarfa, Dotsenko, Y., Mellor-Crummey, J., Nakhleh, L., and Roshan, U.,
“PRec-I-DCM3: A Parallel Framework for Fast and Accurate Large Scale Phylogeny Reconstruction”, in
Proceedigns of the First IEEE Workshop on High Performance Computing in Medicine and Biology, 2005, vol. 2, pp. 346-350.