L. Nakhleh, Roshan, U., John, S. K., Sun, J., and Warnow, T.,
“The Performance of Phylogenetic Methods on Trees of Bounded Diameter”, in
First International Workshop on Algorithms in Bioinformatics (WABI 01), 2001, vol. Lecture Notes in Computer Science 2149, pp. 214–226.
L. Nakhleh, Ruths, D., and Wang, L. S.,
“RIATA-HGT: A Fast and accurate heuristic for reconstrucing horizontal gene transfer”, in
Proceedings of the Eleventh International Computing and Combinatorics Conference (COCOON 05), 2005, vol. 3595, pp. 84-93.
L. Nakhleh, Warnow, T., Linder, C. R., and John, S. K.,
“Reconstructing reticulate evolution in species–theory and practice”, in
Journal of Computational Biology, 2005, vol. 12(6-7), pp. 796-811.
L. Nakhleh, Roshan, U., John, S. K., Sun, J., and Warnow, T.,
“Designing Fast Converging Phylogenetic Methods”,
Bioinformatics, vol. 17, pp. S190–S198, 2001.
L. Nakhleh, Ringe, D., and Warnow, T.,
“Perfect Phylogenetic Networks: A New Methodology for Reconstructing the Evolutionary History of Natural Languages”,
LANGUAGE, Journal of the Linguistic Society of America, vol. 81, pp. 382-420, 2005.
L. Nakhleh,
“A metric on the space of reduced phylogenetic networks”,
IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 7, pp. 218-222, 2010.
tcbb-Metric.pdf (287.01 KB) L. Nakhleh, Roshan, U., Vawter, L., and Warnow, T.,
“Estimating the Deviation from a Molecular Clock”, in
Proceedings of the Second International Workshop on Algorithms in Bioinformatics (WABI 02), Rome, Italy, 2002, vol. 2452, pp. 287-299.