Biblio

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2019
Z. Zhu, Liu, X., Ogilvie, H. A., and Nakhleh, L., “A Divide-and-Conquer Method for Scalable Phylogenetic Network Inference from Multi-locus Data”, Bioinformatics (ISMB 19 Proceedings), vol. 35, pp. i370-i378, 2019.PDF icon ZhuEtAl-ISMB19.pdf (668.97 KB)
2018
X. Fan, Xu, J., and Nakhleh, L., “Detecting large indels using optical map data”, in RECOMB Comparative Genomics, 2018.PDF icon FanEtAl18.pdf (2.94 MB)
R. A. L. Elworth, Allen, C., Benedict, T., Dulworth, P., and Nakhleh, L., “DGEN: A Test Statistic for Detection of General Introgression Scenarios”, Workshop on Algorithms in Bioinformatics (WABI), vol. LIPIcs 19. pp. 19:1 - 19:13, 2018.PDF icon dgen.pdf (547.19 KB)
2015
Y. Yu and Nakhleh, L., “A Distance-based Method for Inferring Phylogenetic Networks in the Presence of Incomplete Lineage Sorting”, International Symposium on Bioinformatics Research and Applications (ISBRA), vol. Lecture Notes in Bioinformatics 9096. pp. 378-389, 2015.PDF icon YuNakhleh-ISBRA15.pdf (327.21 KB)
2010
D. Ruths and Nakhleh, L., “Deriving predictive models of signaling network dynamics from qualitative experimental data”, in Proceedings of the 9th Annual International Conference on Computational Systems Biology, 2010.PDF icon RuthsNakhleh-CSB2010.pdf (548.82 KB)
2007
D. Ruths, Tseng, J. T., Nakhleh, L., and Ram, P. T., “De novo Signaling Pathway Predictions based on Protein-Protein Interaction, Targeted Therapy and Protein Microarray Analysis”, in Proceedings of the RECOMB Satellite Workshop on Systems Biology and Proteomics, 2007, vol. 4205, pp. 108-118.
2001
L. Nakhleh, Roshan, U., John, S. K., Sun, J., and Warnow, T., “Designing Fast Converging Phylogenetic Methods”, Bioinformatics, vol. 17, pp. S190–S198, 2001.