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Biblio
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BioNetModel
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Luay Nakhleh
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C
W. Zhou
and
Nakhleh, L.
,
“
Convergent evolution of modularity in metabolic networks through different community structures
”
,
BMC Evolutionary Biology
, vol. 12, p. 181, 2012.
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ZhouNakhleh-BMCEvolBiol2012.pdf
(1.88 MB)
E
N. Berestovsky
and
Nakhleh, L.
,
“
An Evaluation of Methods for Inferring Boolean Networks from Time-series Data
”
,
PLoS One
, vol. 8, p. e66031, 2013.
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BerestovskyNakhleh-PLoSOne13.pdf
(942.99 KB)
M
S. Iadevaia
,
Nakhleh, L.
,
Azencott, R.
, and
Ram, P. T.
,
“
Mapping network motif tunability and robustness in the design of synthetic signaling circuits
”
,
PLoS One
, vol. 9, no. 3, p. e91743, 2014.
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IadevaiaEtAl-PLoSOne14.pdf
(1.01 MB)
N. Berestovsky
,
Zhou, W.
,
Nagrath, D.
, and
Nakhleh, L.
,
“
Modeling Integrated Cellular Machinery Using Hybrid Petri-Boolean Networks
”
,
PLoS Computational Biology
, vol. 9, no. 11, p. e1003306, 2013.
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BerestovskyEtAl13.pdf
(1.66 MB)
Q
W. Zhou
and
Nakhleh, L.
,
“
Quantifying And Assessing the Effect of Chemical Symmetry in Metabolic Pathways
”
,
Journal of Chemical Information and Modeling
, vol. 52, pp. 2684-2696, 2012.
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ZhouNakhleh-JCIM2012.pdf
(2.66 MB)