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Biblio
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K. Chen
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2019
H. Zafar
,
Navin, N.
,
Chen, K.
, and
Nakhleh, L.
,
“
SiCloneFit: Bayesian inference of population structure, genotype, and phylogeny of tumor clones from single-cell genome sequencing data
”
,
Genome Research
, 2019.
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2017
H. Zafar
,
Navin, N.
,
Nakhleh, L.
, and
Chen, K.
,
“
Computational approaches for inferring tumor evolution from single-cell genomic data
”
,
Current Opinion in Systems Biology
, vol. 7, pp. 16-25, 2017.
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ZafarEtAl-Rev2017.pdf
(1.34 MB)
X. Fan
,
Chaisson, M.
,
Nakhleh, L.
, and
Chen, K.
,
“
HySA: A Hybrid Structural variant Assembly approach using next generation and single-molecule sequencing technologies
”
,
Genome Research
, vol. 27, pp. 793-800, 2017.
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Genome Res.-2017-Fan-793-800.pdf
(476.55 KB)
H. Zafar
,
Tzen, A.
,
Navin, N.
,
Chen, K.
, and
Nakhleh, L.
,
“
SiFit: A method for inferring tumor trees from single-cell sequencing data under finite-site models
”
,
Genome Biology
, vol. 18, p. 178, 2017.
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ZafarEtAl-GB17.pdf
(2.12 MB)
2016
H. Zafar
,
Wang, Y.
,
Nakhleh, L.
,
Navin, N.
, and
Chen, K.
,
“
Monovar: single nucleotide variant detection in single cells
”
,
Nature Methods
, vol. 13, no. 6, pp. 505-507, 2016.
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ZafarEtAl-NMETH2016.pdf
(1.51 MB)