TY - JOUR
T1 - Phylogenetic networks: modeling, reconstructibility, and accuracy
JF - IEEE/ACM Transactions on Computational Biology and Bioinformatics
Y1 - 2004
A1 - B.M.E. Moret
A1 - L. Nakhleh
A1 - T. Warnow
A1 - C.R. Linder
A1 - A. Tholse
A1 - A. Padolina
A1 - J. Sun
A1 - R. Timme
KW - PhyloNet
VL - 1
N1 - Lemma 1 is incorrect (and, consequently, Theorem 3 is incorrect). m^{tri} is a dissimilarity measure, but not a metric on the space of reduced networks. Further, the reduction procedure does not accurately capture the "indistinguishability" part. See Publication "A metric on the space of reduced phylogenetic networks" for a metric on the space of reduced phylogenetic networks, and for a revised version of the reduction procedure.
ER -
TY - CONF
T1 - Towards the development of tools for evaluating phylogenetic network reconstruction methods
T2 - Proc.\ 8th Pacific Symp. on Biocomputing ({PSB03})
Y1 - 2003
A1 - L. Nakhleh
A1 - J. Sun
A1 - T. Warnow
A1 - R. Linder
A1 - B.M.E. Moret
A1 - A. Tholse
KW - PhyloNet
JF - Proc.\ 8th Pacific Symp. on Biocomputing ({PSB03})
PB - World Scientific Pub.
ER -
TY - CONF
T1 - The Accuracy of Phylogenetic Methods for Large Datasets
T2 - Proc.\ 7th Pacific Symp. on Biocomputing ({PSB02})
Y1 - 2002
A1 - L. Nakhleh
A1 - B.M.E. Moret
A1 - U. Roshan
A1 - K. St. John
A1 - J. Sun
A1 - T. Warnow
KW - Trees
JF - Proc.\ 7th Pacific Symp. on Biocomputing ({PSB02})
VL - 7
ER -
TY - JOUR
T1 - Designing Fast Converging Phylogenetic Methods
JF - Bioinformatics
Y1 - 2001
A1 - L. Nakhleh
A1 - U. Roshan
A1 - K. St. John
A1 - J. Sun
A1 - T. Warnow
KW - Trees
VL - 17
N1 - ISMB01 Conference
ER -
TY - CONF
T1 - The Performance of Phylogenetic Methods on Trees of Bounded Diameter
T2 - First International Workshop on Algorithms in Bioinformatics (WABI 01)
Y1 - 2001
A1 - L. Nakhleh
A1 - U. Roshan
A1 - K. St. John
A1 - J. Sun
A1 - T. Warnow
ED - O. Gascuel
ED - B.M.E. Moret
KW - Trees
JF - First International Workshop on Algorithms in Bioinformatics (WABI 01)
VL - Lecture Notes in Computer Science 2149
ER -